An R Package for the Mean Measure of Divergence (MMD)

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Documentation for package ‘AnthropMMD’ version 4.0.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

AnthropMMD-package	An R package for the Mean Measure of Divergence (MMD)
absolute_freqs	A toy example dataset for mean measures of divergence, in a table format
AnthropMMD	An R package for the Mean Measure of Divergence (MMD)
binary_to_table	Converts a data frame of binary (i.e., presence/absence) trait information into a table of sample sizes and frequencies.
mmd	Compute MMD values from a table of sample sizes and relative frequencies
mmd_boot	Implementation of Fidalgo et al.'s (2022) method of bootstrap for the Mean Measure of Divergence
plot.anthropmmd_boot	Display a multidimensional scaling (MDS) plot using Fidalgo et al's (2022) bootstrap method for MMD
plot.anthropmmd_result	Display a multidimensional scaling (MDS) plot with the MMD dissimilarities as input
select_traits	Select a subset of traits meeting certain criteria
StartMMD	An R-Shiny application for the mean measure of divergence
start_mmd	An R-Shiny application for the mean measure of divergence
table_relfreq	Converts a table of sample sizes and frequencies into a table of sample sizes and relative frequencies.
toyMMD	A toy example dataset for mean measures of divergence, in a binary format