Staged Event Trees
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Documentation for package ‘stagedtrees’ version 2.3.0
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A B C D F G H I J L M P R S T W misc
| stagedtrees-package | Staged event trees. |
-- A --
| as.character.parentslist | Print a parentslist object |
| Asym | Asym dataset |
| as_adj_matrix | Convert to an adjacency matrix |
| as_adj_matrix.ceg | Convert to an adjacency matrix |
| as_adj_matrix.parentslist | Convert to an adjacency matrix |
| as_bn | Convert to a 'bnlearn' object |
| as_bn.parentslist | Convert to a 'bnlearn' object |
| as_bn.sevt | Convert to a 'bnlearn' object |
| as_igraph | 'igraph' conversion |
| as_igraph.ceg | 'igraph' conversion |
| as_igraph.sevt | 'igraph' conversion |
| as_parentslist | Obtain the equivalent DAG as list of parents |
| as_parentslist.bn | Obtain the equivalent DAG as list of parents |
| as_parentslist.bn.fit | Obtain the equivalent DAG as list of parents |
| as_parentslist.sevt | Obtain the equivalent DAG as list of parents |
| as_sevt | Coerce to sevt |
| as_sevt.bn | Coerce to sevt |
| as_sevt.bn.fit | Coerce to sevt |
| as_sevt.parentslist | Coerce to sevt |
-- B --
| barplot.sevt | Bar plots of stage probabilities |
-- C --
| ceg | Chain event graph (CEG) |
| cid | Context specific interventional discrepancy |
| ci_matrices | Conditional independences matrices of stages |
| compare_stages | Compare two staged event tree |
| confint.sevt | Confidence intervals for staged event tree parameters |
| covid_patients | Trajectories of hospitalized SARS-CoV-2 patients |
-- D --
| depsubtree | Extract dependency subtree |
| diff_stages | Compare two staged event tree |
-- F --
| full | Full and independent staged event tree |
| full.data.frame | Full and independent staged event tree |
| full.table | Full and independent staged event tree |
| full_indep | Full and independent staged event tree |
-- G --
| generate_linear_dataset | Generate a random binary dataset for classification |
| generate_random_dataset | Generate a random binary dataset |
| generate_xor_dataset | Generate a xor dataset |
| get_edges | 'igraph' conversion |
| get_edges.ceg | 'igraph' conversion |
| get_edges.sevt | 'igraph' conversion |
| get_path | Get stage or path |
| get_stage | Get stage or path |
| get_vertices | 'igraph' conversion |
| get_vertices.ceg | 'igraph' conversion |
| get_vertices.sevt | 'igraph' conversion |
-- H --
| hamming_stages | Compare two staged event tree |
-- I --
| igraph-conversion | 'igraph' conversion |
| inclusions_stages | Inclusions of stages |
| indep | Full and independent staged event tree |
| indep.data.frame | Full and independent staged event tree |
| indep.table | Full and independent staged event tree |
-- J --
| join_positions | join positions in a staged tree model |
| join_unobserved | Join situations with no observations |
-- L --
| logLik.sevt | Log-Likelihood of a staged event tree |
| lr_test | Likelihood Ratio Test for staged trees models |
-- M --
| make_stages_col | Plot method for staged event trees |
-- P --
| PhDArticles | PhD Students Publications |
| plot.ceg | igraph's plotting for CEG |
| plot.sevt | Plot method for staged event trees |
| Pokemon | Pokemon Go Users |
| predict.sevt | Predict method for staged event tree |
| print.parentslist | Print a parentslist object |
| print.sevt | Print a staged event tree |
| print.sevt.stgs | The stages of a staged event tree |
| print.summary.sevt | Summarizing staged event trees |
| prob | Probabilities for a staged event tree |
-- R --
| random_parentslist | Generate a random 'parentslist' object (DAG) |
| random_sevt | Generate a random (fitted) sevt |
| random_sevt.list | Generate a random (fitted) sevt |
| random_sevt.parentslist | Generate a random (fitted) sevt |
| random_sevt.sevt | Generate a random (fitted) sevt |
| rename_stage | Rename stage(s) in staged event tree |
-- S --
| sample_from | Sample from a staged event tree |
| search_best | Optimal Order Search |
| search_greedy | Greedy Order Search |
| sevt | Staged event tree (sevt) class |
| sevt.data.frame | Staged event tree (sevt) class |
| sevt.list | Staged event tree (sevt) class |
| sevt.table | Staged event tree (sevt) class |
| sevt_add | Add a variable to a staged event tree |
| sevt_df | Number of parameters of a staged event tree |
| sevt_fit | Fit a staged event tree |
| sevt_nvar | Number of variables |
| sevt_simplify | Simplify a staged tree model |
| sevt_varnames | Variable names |
| stagedtrees | Staged event trees. |
| stages | The stages of a staged event tree |
| stages.sevt | The stages of a staged event tree |
| stages<- | The stages of a staged event tree |
| stages_bhc | Backward hill-climbing |
| stages_bhcr | Backward random hill-climbing |
| stages_bj | Backward joining of stages |
| stages_csbhc | Context-specific Backward hill-climbing |
| stages_fbhc | Fast backward hill-climbing |
| stages_hc | Hill-climbing |
| stages_hclust | Learn a staged tree with hierarchical clustering |
| stages_kmeans | Learn a staged tree with k-means clustering |
| stages_simplebhc | Backward hill-climbing for simple staged trees |
| stndnaming | Standard renaming of stages |
| subtree | Extract subtree |
| summary.sevt | Summarizing staged event trees |
-- T --
| text.sevt | Add text to a staged event tree plot |
| trajectories | Hospital trajectories |
-- W --
| write_tikz | Export the staged tree or CEG graph to tikz |
| write_tikz.sevt | Export the staged tree or CEG graph to tikz |
-- misc --
| [.sevt.stgs | The stages of a staged event tree |
| [<-.sevt.stgs | The stages of a staged event tree |
| [[.sevt.stgs | The stages of a staged event tree |
| [[<-.sevt.stgs | The stages of a staged event tree |