Storing, Manipulating and Analysis Spectroscopy and Associated Data

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Documentation for package ‘spectacles’ version 0.5-4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

A B C D E F I K L M N O P R S W misc

spectacles-package

Storing, Manipulating and Analysis Spectroscopy and Associated Data in R

-- A --

aggregate_spectra	Aggregates spectral and data information
aggregate_spectra-method	Aggregates spectral and data information
apply_spectra	Apply a function on the spectra of a Spectra* object
as.data.frame.SpatialSpectra	Spectra* classes
as.data.frame.Spectra	Spectra* classes
as.data.frame.SpectraDataFrame	Spectra* classes
australia	Australia spectra library data set

-- B --

base_line	Baseline correction using the baseline package#'
base_line-method	Baseline correction using the baseline package#'
big.head	Return the First or Last Part of an Object
big.tail	Return the First or Last Part of an Object

-- C --

continuum_removal	Continuum removal
cut	Manipulating the wavelength range of a 'Spectra' object
cut-method	Manipulating the wavelength range of a 'Spectra' object

-- D --

dim	Retrieve dimensions of Spectra* objects
dim.Spectra	Retrieve dimensions of Spectra* objects
dimensions	Retrieve dimensions of Spectra* objects

-- E --

extraction-methods

Extracting and replacing parts of Spectra* objects

-- F --

features	Retrieves or sets the data slot of a SpectraDataFrame object.
features-method	Retrieves or sets the data slot of a SpectraDataFrame object.
features-methods	Retrieves or sets the data slot of a SpectraDataFrame object.
features<-	Retrieves or sets the data slot of a SpectraDataFrame object.
features<--method	Retrieves or sets the data slot of a SpectraDataFrame object.
fill_spectra	Fill missing wavelengths of a Spectra* object with a given value
fill_spectra-method	Fill missing wavelengths of a Spectra* object with a given value

-- I --

ids	Retrieves or sets the ids of a 'Spectra*' object.
ids-method	Retrieves or sets the ids of a 'Spectra*' object.
ids<-	Retrieves or sets the ids of a 'Spectra*' object.
ids<--method	Retrieves or sets the ids of a 'Spectra*' object.

-- K --

kenstone	Kennard-Stone algorithm for optimal calibration set selection.
kenstone-method	Kennard-Stone algorithm for optimal calibration set selection.

-- L --

length	Retrieve dimensions of Spectra* objects
length.Spectra	Retrieve dimensions of Spectra* objects
load_oz	Load the australia dataset

-- M --

melt_spectra	Melts the spectra data of a Spectra object and returns it as wide format.
melt_spectra-method	Melts the spectra data of a Spectra object and returns it as wide format.
melt_spectra-methods	Melts the spectra data of a Spectra object and returns it as wide format.
mutate	Mutate a Spectra* object by transforming the spectra values, and/or adding new or replacing existing attributes.
mutate-method	Mutate a Spectra* object by transforming the spectra values, and/or adding new or replacing existing attributes.
mutate.Spectra	Mutate a Spectra* object by transforming the spectra values, and/or adding new or replacing existing attributes.

-- N --

names.SpectraDataFrame	Spectra* classes
names<-.SpectraDataFrame	Spectra* classes
ncol-method	Retrieve dimensions of Spectra* objects
nrow-method	Retrieve dimensions of Spectra* objects

-- O --

oz	Australia spectra library data set

-- P --

plot	Plots an object inheriting from the Spectra class
plot-method	Plots an object inheriting from the Spectra class
plot-Spectra	Plots an object inheriting from the Spectra class
plot.Spectra	Plots an object inheriting from the Spectra class
plot_offset	Offset plot of a collection of spectra
plot_offset-method	Offset plot of a collection of spectra
plot_stack	Stacked plot of a collection of spectra
plot_stack-method	Stacked plot of a collection of spectra
plot_summary	Summary plot of a collection of spectra
plot_summary-method	Summary plot of a collection of spectra
postResampleSpectro	Calculates performance indictors across resamples
print-method	Spectra* classes
print.summary.Spectra	Summary

-- R --

rbind	Stacking 'Spectra' objects together
rbind.Spectra	Stacking 'Spectra' objects together
rbind.SpectraDataFrame	Stacking 'Spectra' objects together
res	Spectral resolution
res-method	Spectral resolution
rnv	Standard and Robust Normal Variate transformations

-- S --

separate	Separates a 'Spectra*' object into a calibration and a validation set.
separate-method	Separates a 'Spectra*' object into a calibration and a validation set.
separate.Spectra	Separates a 'Spectra*' object into a calibration and a validation set.
show-method	Spectra* classes
snv	Standard and Robust Normal Variate transformations
spectacles	Spectra* classes
Spectra	Constructor for the Spectra class.
spectra	Retrieves or sets the spectra of a 'Spectra*' objects.
Spectra-class	Spectra* classes
spectra-method	Retrieves or sets the spectra of a 'Spectra*' objects.
spectra-methods	Retrieves or sets the spectra of a 'Spectra*' objects.
spectra<-	Retrieves or sets the spectra of a 'Spectra*' objects.
spectra<--method	Retrieves or sets the spectra of a 'Spectra*' objects.
SpectraDataFrame	Constructor for the SpectraDataFrame class.
SpectraDataFrame-class	Spectra* classes
spectroSummary	Calculates performance indictors across resamples
splice	Splice correction of a spectra collected using ASD hardware
splice-method	Splice correction of a spectra collected using ASD hardware
split	Split a Spectra* object using factors
split-method	Split a Spectra* object using factors
split.Spectra	Split a Spectra* object using factors
subset	Subset SpectraDataFrame object
subset-method	Subset SpectraDataFrame object
subset.SpectraDataFrame	Subset SpectraDataFrame object
summary	Summary
summary.Spectra	Summary

-- W --

wl	Retrieves or sets the wavelengths of a 'Spectra*' object.
wl-method	Retrieves or sets the wavelengths of a 'Spectra*' object.
wl<-	Retrieves or sets the wavelengths of a 'Spectra*' object.
wl<--method	Retrieves or sets the wavelengths of a 'Spectra*' object.
wl_units	Wavelengths of Spectra* objects
wl_units-method	Wavelengths of Spectra* objects
wl_units<-	Wavelengths of Spectra* objects
wl_units<--method	Wavelengths of Spectra* objects

-- misc --

$	Extracting and replacing parts of Spectra* objects
$-method	Extracting and replacing parts of Spectra* objects
$<-	Extracting and replacing parts of Spectra* objects
$<--method	Extracting and replacing parts of Spectra* objects
[	Extracting and replacing parts of Spectra* objects
[-method	Extracting and replacing parts of Spectra* objects
[<-	Extracting and replacing parts of Spectra* objects
[<--method	Extracting and replacing parts of Spectra* objects
[[	Extracting and replacing parts of Spectra* objects
[[-method	Extracting and replacing parts of Spectra* objects
[[<-	Extracting and replacing parts of Spectra* objects
[[<--method	Extracting and replacing parts of Spectra* objects