Reproducible Pipeline Infrastructure for Neuroscience
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Documentation for package ‘ravepipeline’ version 0.0.1
Help Pages
| add_module_registry | 'RAVE' module registry |
| configure_knitr | Configure "rmarkdown" files to build 'RAVE' pipelines |
| get_modules_registries | 'RAVE' module registry |
| get_module_description | 'RAVE' module registry |
| install_modules | Install 'RAVE' modules |
| install_snippet | 'RAVE' code snippets |
| list_snippets | 'RAVE' code snippets |
| load_snippet | 'RAVE' code snippets |
| load_targets | Low-level 'RAVE' pipeline functions |
| module_add | Add new 'RAVE' (2.0) module to current project |
| module_registry | 'RAVE' module registry |
| module_registry2 | 'RAVE' module registry |
| pipeline | Creates 'RAVE' pipeline instance |
| pipeline-knitr-markdown | Configure "rmarkdown" files to build 'RAVE' pipelines |
| PipelineResult | Pipeline result object |
| PipelineTools | Class definition for pipeline tools |
| pipeline_attach | Low-level 'RAVE' pipeline functions |
| pipeline_build | Low-level 'RAVE' pipeline functions |
| pipeline_clean | Low-level 'RAVE' pipeline functions |
| pipeline_create_subject_pipeline | Low-level 'RAVE' pipeline functions |
| pipeline_create_template | Low-level 'RAVE' pipeline functions |
| pipeline_debug | Low-level 'RAVE' pipeline functions |
| pipeline_dep_targets | Low-level 'RAVE' pipeline functions |
| pipeline_description | Low-level 'RAVE' pipeline functions |
| pipeline_eval | Low-level 'RAVE' pipeline functions |
| pipeline_find | Low-level 'RAVE' pipeline functions |
| pipeline_fork | Low-level 'RAVE' pipeline functions |
| PIPELINE_FORK_PATTERN | Constant variables used in 'RAVE' pipeline |
| pipeline_from_path | Creates 'RAVE' pipeline instance |
| pipeline_get_preferences | Low-level 'RAVE' pipeline functions |
| pipeline_hasname | Low-level 'RAVE' pipeline functions |
| pipeline_has_preferences | Low-level 'RAVE' pipeline functions |
| pipeline_install | Install 'RAVE' pipelines |
| pipeline_install_github | Install 'RAVE' pipelines |
| pipeline_install_local | Install 'RAVE' pipelines |
| pipeline_list | Low-level 'RAVE' pipeline functions |
| pipeline_load_extdata | Low-level 'RAVE' pipeline functions |
| pipeline_progress | Low-level 'RAVE' pipeline functions |
| pipeline_read | Low-level 'RAVE' pipeline functions |
| pipeline_render | Configure "rmarkdown" files to build 'RAVE' pipelines |
| pipeline_root | Low-level 'RAVE' pipeline functions |
| pipeline_run | Low-level 'RAVE' pipeline functions |
| pipeline_run_bare | Low-level 'RAVE' pipeline functions |
| pipeline_save_extdata | Low-level 'RAVE' pipeline functions |
| pipeline_settings_get | Get or change pipeline input parameter settings |
| pipeline_settings_get_set | Get or change pipeline input parameter settings |
| pipeline_settings_set | Get or change pipeline input parameter settings |
| pipeline_setup_rmd | Configure "rmarkdown" files to build 'RAVE' pipelines |
| pipeline_set_preferences | Low-level 'RAVE' pipeline functions |
| pipeline_shared | Low-level 'RAVE' pipeline functions |
| pipeline_target_names | Low-level 'RAVE' pipeline functions |
| pipeline_vartable | Low-level 'RAVE' pipeline functions |
| pipeline_visualize | Low-level 'RAVE' pipeline functions |
| pipeline_watch | Low-level 'RAVE' pipeline functions |
| rave-pipeline | Low-level 'RAVE' pipeline functions |
| rave-snippet | 'RAVE' code snippets |
| raveio-option | Set/Get 'RAVE' option |
| raveio_confpath | Set/Get 'RAVE' option |
| raveio_getopt | Set/Get 'RAVE' option |
| raveio_resetopt | Set/Get 'RAVE' option |
| raveio_setopt | Set/Get 'RAVE' option |
| ravepipeline-constants | Constant variables used in 'RAVE' pipeline |
| ravepipeline_finalize_installation | Download 'RAVE' built-in pipelines and code snippets |
| update_local_snippet | 'RAVE' code snippets |