Principal Coordinates of Phylogenetic Structure

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Documentation for package ‘PCPS’ version 1.0.7

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check.formula Internal function
define.clade Define clade
FUN.ADONIS Association between phylogeny-weighted species composition and environmental predictors
FUN.ADONIS2.global Association between phylogeny-weighted species composition and environmental predictors
FUN.ADONIS2.margin Association between phylogeny-weighted species composition and environmental predictors
FUN.GLM Association between phylogeny-weighted species composition and environmental predictors
FUN.GLS.marginal Association between phylogeny-weighted species composition and environmental predictors
FUN.GLS.sequential Association between phylogeny-weighted species composition and environmental predictors
FUN.LME.marginal Association between phylogeny-weighted species composition and environmental predictors
FUN.LME.sequential Association between phylogeny-weighted species composition and environmental predictors
FUN.MANTEL Association between phylogeny-weighted species composition and environmental predictors
FUN.RDA Association between phylogeny-weighted species composition and environmental predictors
matrix.p.null Auxiliar function to generate sets of null P matrix or null PCPS
matrix.p.sig Association between phylogeny-weighted species composition and environmental predictors
mutate.names.matrix.p.null Internal function
organize.pcps Function for organize data for Package PCPS
pcoa.sig Significant dimensions in principal coordinate analysis
pcpc.curve.calc Curve of phylogenetic signal at metacommunity level
pcps Principal Coordinates of Phylogenetic Structure
pcps.curve Curve of phylogenetic signal at metacommunity level
pcps.sig Association between phylogeny-weighted species composition and environmental predictors
plot.pcps Principal Coordinates of Phylogenetic Structure
plot.pcpscurve Curve of phylogenetic signal at metacommunity level
print.pcoasig Significant dimensions in principal coordinate analysis
print.pcps Principal Coordinates of Phylogenetic Structure
print.pcpscurve Curve of phylogenetic signal at metacommunity level
print.pcpssig Association between phylogeny-weighted species composition and environmental predictors
print.summarypcoasig Significant dimensions in principal coordinate analysis
print.summarypcps Principal Coordinates of Phylogenetic Structure
scores.pcps Principal Coordinates of Phylogenetic Structure
select.pcpsmethod Internal function
self.belonging Degree of self belonging of species
summary.pcoasig Significant dimensions in principal coordinate analysis
summary.pcps Principal Coordinates of Phylogenetic Structure
summary.pcpscurve Curve of phylogenetic signal at metacommunity level
wcmdscale.org Internal function for organize the results of wcmdscale function