Modular Crop Growth Simulations

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Documentation for package ‘BioCro’ version 3.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

add_csv_row	Define and modify BioCro module test case files
add_time_to_weather_data	Add a time component to input
annualDB	Miscanthus dry biomass data.
annualDB2	Miscanthus dry biomass data.
case	Run BioCro module test cases
cases_from_csv	Run BioCro module test cases
catm_data	Global annual mean atmopspheric CO2 levels
cmi_soybean_weather_data	Champaign, IL weather data for Soybean-BioCro
cmi_weather_data	Champaign, IL weather data
compare_model_output	Compare new and stored results for a BioCro model test case
crop_model_definitions	Crop model definitions
default_ode_solvers	Default ODE solver settings
dynamical_system	Validating dynamical system inputs
evaluate_module	BioCro module functions
get_all	Get lists of modules, quantities, and solvers
get_all_modules	Get lists of modules, quantities, and solvers
get_all_ode_solvers	Get lists of modules, quantities, and solvers
get_all_quantities	Get lists of modules, quantities, and solvers
get_growing_season_climate	Truncate weather data to one growing season
initialize_csv	Define and modify BioCro module test case files
miscanthus_x_giganteus	Miscanthus model definition
model_testing	The BioCro model testing system
model_test_case	Define BioCro model test cases
modules	BioCro module functions
module_case_files	Define and modify BioCro module test case files
module_creators	Create instances of modules
module_info	BioCro module functions
module_paste	Prepend library name to module names
module_response_curve	BioCro module functions
module_testing	The BioCro module testing system
module_write	Generate a BioCro module header file.
obsBea	Miscanthus assimilation field data
obsBeaC	Complete Miscanthus assimilation field data
obsNaid	Miscanthus assimilation data
partial_application	Convenience Functions for Partial Application
partial_evaluate_module	Convenience Functions for Partial Application
partial_run_biocro	Convenience Functions for Partial Application
quantity_list_from_names	BioCro module functions
run_biocro	Simulate Crop Growth with BioCro
run_model_test_cases	Run BioCro model test cases
soil_parameters	Soil properties
soybean	Soybean-BioCro model definition
soybean_clock	Soybean-BioCro circadian clock model definition
soybean_weather	Champaign, IL weather data for Soybean-BioCro
system_derivatives	Calculate Derivatives for Differential Quantities
test_module	Run BioCro module test cases
test_module_library	Run module test cases for an entire BioCro module library
time	The 'time' variable in BioCro
Time Variable	The 'time' variable in BioCro
update_csv_cases	Define and modify BioCro module test case files
update_stored_model_results	Updated stored result for a BioCro model test case
validate_dynamical_system_inputs	Validating dynamical system inputs
weather	Champaign, IL weather data
willow	Willow model definition